PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093311.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 398aa    MW: 45365.9 Da    PI: 4.5456
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093311.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.11.4e-33161082103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k ye++ d++++++isw+++g+ fv++d+++f+ ++Lpk+Fkhsnf+SF+RQLn+YgF+kv++++         w F+ + F +g+k+ll++
  XP_010093311.1  16 FLRKCYEMVGDNSTDSIISWNDTGDCFVIWDMTQFSVQLLPKFFKHSNFSSFMRQLNIYGFRKVDTDH---------WIFASDGFIRGQKHLLKN 101
                     9*****************************************************************99.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_010093311.1 102 ICRRKNT 108
                     ****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-5112105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.85E-3312105IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3412105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-2916105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MVKSRENGDD GSVAPFLRKC YEMVGDNSTD SIISWNDTGD CFVIWDMTQF SVQLLPKFFK  60
HSNFSSFMRQ LNIYGFRKVD TDHWIFASDG FIRGQKHLLK NICRRKNTQG PDQRKASQQK  120
EHQPDELREK VQNGLENGMW KEVENLKTDK NVLMQELVKL QQHQEISENK LLVLRDRLQG  180
LEKNQQQMLS FLVMAMQSPG FFVQLLQPKE NNWRVAEAGN MLEQGSLDDK TMASDGMIVR  240
YQSPMTETSD PAFTPTSGAE KTPDSGSYPD GMQDFFLNSN NYSDFLKVLM DEKLCSLESH  300
SPLVLPDTDD GSWRQLLLAS RFLENVEETK EDGEETVDSG MEAELTLPGT PLGNSQNFDL  360
FGMESTVSET NLEKAQYMDT LTEQMGLLSS EPKNRHGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-211210525129Heat shock factor protein 1
5d5v_B2e-211210525129Heat shock factor protein 1
5d5v_D2e-211210525129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093311.10.0Heat stress transcription factor A-8
TrEMBLW9R1410.0W9R141_9R
STRINGPOPTR_0010s11490.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-98heat shock transcription factor A8